MTIG Files Citizen Petition Urging FDA to Close the “IND‑Loophole” and Modernize Fecal Microbiota Transplant Policy
The Microbiome Therapeutics Innovation Group (MTIG) today announced the submission of a Citizen Petition to the U.S. Food and Drug Administration (FDA) asking the Agency to revise its 2022 enforcement discretion guidance on fecal microbiota transplantation (FMT). The petition calls for an end to an “IND loophole,” where current enforcement discretion policy is inadvertently permitting large-scale distribution of unapproved stool-based products despite the availability of two FDA-approved microbiome therapeutics.
“Patients now have access to microbiome breakthroughs via FDA approved, quality controlled therapeutics,” said Johan E.T. van Hylckama Vlieg, MTIG Chair. “Reliance on enforcement discretion and distribution under indefinite INDs exposes patients to unnecessary risks and undermines the microbiome field, despite a large pipeline of innovations that hold transformative potential for patient care. We respectfully urge FDA to update its guidance so the regulatory framework matches today’s science.”
The petition is publicly available at: https://www.regulations.gov/docket/FDA-2025-P-3129/document
Why action is needed:
- Patient safety: Reports of serious infections—including at least one death—underscore the hazards of unvetted material.
- Healthcare clarity: Physicians, payers, and patients deserve confidence that every microbiome therapy meets the same gold-standard safeguards as other approved therapeutics.
- American competitiveness: Companies that invest in drug development drive biomanufacturing and keep the U.S. ahead in the biotechnology field.
MTIG’s petition emphasizes that legitimate clinical research under IND and local programs should continue.
The group notes that continuation of enforcement discretion upholds a policy that was intended as a stopgap before any approved therapies existed.
About MTIG
The Microbiome Therapeutics Innovation Group (MTIG) is a coalition of companies leading the research and development of FDA-approved microbiome therapeutic drugs and microbiome-based products to address unmet medical needs, improve clinical outcomes, and reduce health care costs.
Media Contact info@microbiometig.org
